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PU

Pragati Upadhyay

Computational Biologist · Multi-omics & NGS Analysis

United States

@pragati_upadhyay

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About

Computational biologist with over 3 years of experience in multi-omics data analysis, statistical modeling, and biomarker discovery. Experienced in large clinical-trial NGS datasets, translational research, and cross-functional collaboration to support precision diagnostics and therapy development.

Experience

  • Computational Biologist II
    Ferris lab, Lineberger Comprehensive Cancer Center
    Jul 2025 – Present
  • Bioinformatics Analyst
    Ferris lab, UPMC Hillman Cancer Center
    Aug 2023 – Jul 2025
  • Computational Biology Co-op
    Obsidian Therapeutics
    Jan 2023 – Mar 2023
  • Graduate Research Assistant
    Computational Chemistry lab, Northeastern University
    Aug 2022 – Jan 2023
  • Director of Academic Affairs
    Graduate Biotechnology and Bioinformatics Association, Northeastern University
    Jul 2022 – Apr 2023

Education

Skills

<3 months <3 months Just getting started - under three months. This is also what shows when a level has not been set.
R SQL Git AWS HPC Bash Gatk Star Linux Excel Azure Slurm Fastp Edger Conda Python Docker Fastqc Bowtie Deseq2 Seurat Scanpy Salmon Nf-Core Trinity Nextflow Pyscenic Cellchat Samtools Pseudotime Correlation Trimmomatic Cell Ranger Singularity Bioconductor Screpertoire Variant Calling Clonal Analysis Survival Analysis Scmalignantfinder Pathway Enrichment Rna Fusion Detection Gene Regulatory Network Receptor Ligand Interaction Differential Gene Expression

📚 Publications

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